Ed Tim

Publications

Scientific publications by E.G. Timoshenko

• 1. G. Bellesia, M.V. Fedorov, E.G. Timoshenko. "Structural transitions in model beta-sheet tapes." J. Chem. Phys., Vol. 128, 195105, 7 pages, (2008).      [PDF]
  
• 2. S.Elli, G. Raffaini, F. Ganazzoli, E.G. Timoshenko, Yu.A. Kuznetsov. "Surface adsorption of comb polymers by Monte Carlo simulations." Polymer, Vol. 49, No 6, pp. 1716-1724 (2008).     [PDF]
  
• 3. S. Elli, F. Ganazzoli, E.G. Timoshenko, Yu.A. Kuznetsov. "Modeling of comb polymers with a high branching density." In: Research activities on High Performance Computing Clusters at CILEA 2006", pp. 27-38, Publisher: CILEA, ISBN 978-88-88971-12-4, Italy, 2007.     [PDF]
  
• 4. E.G. Timoshenko, Yu.A. Kuznetsov, G.E. Simonov. "Conformations of isolated ampholytic dendrimers in solutions." Physica A, Vol. 379, No 1, pp. 23-31 (2007).     [PDF]
  
• 5. G. Bellesia, M.V. Fedorov, E.G. Timoshenko. "Molecular Dynamics study of structural properties of beta-sheet assemblies formed by synthetic de novo oligopeptides." Physica A, Vol. 373, pp. 455-476 (2007).     [PDF]
  
• 6. G.N. Chuev, M.V. Fedorov, H.J. Luo, D. Kolb, E.G. Timoshenko. "3D wavelet treatment of solvated bipolaron and polaron." J. Theor. Computat. Chem., Vol. 4, No. 3, pp. 751-767 (2005).      [PDF]
  
• 7. R. Connolly, G. Bellesia, E.G. Timoshenko, Yu.A. Kuznetsov, S. Elli, F. Ganazzoli. "'Intrinsic' and 'topological' stiffness in branched polymers." Macromolecules, Vol. 38, No 12, pp. 5288 - 5299 (2005).      [PDF]
  
• 8. G. Bellesia, M.V. Fedorov, Yu.A. Kuznetsov, E.G. Timoshenko. "Structure and stability of chiral beta-tapes: a computational coarse-grained approach." J. Chem. Phys. Vol. 122, No 13, pp. 134901 - 134901-10 (2005).     [PDF]
  
• 9. M.V. Fedorov, G.N. Chuev, Yu.A. Kuznetsov, E.G. Timoshenko. "Wavelet treatment of the intra-chain correlation functions of homopolymers in dilute solutions." Phys. Rev. E Vol. 70, No 5, pp. 051803 - 051803-13 (2004).      [PDF]
  
• 10. R. Connolly, E.G. Timoshenko, Yu.A. Kuznetsov. "Monte Carlo simulations of amphiphilic co-dendrimers in dilute solution." Macromolecules, Vol. 37, No 19, pp. 7381-7392 (2004).      [PDF]
  
• 11. E.G. Timoshenko. "Super Gaussian Self-Consistent method for systems with a two-body Hamiltonian." The Proceedings of "The XVIIth International QFTHEP Workshop," 4-11 September 2003, Samara-Saratov, Russia, Skobeltsyn Institute of Nuclear Physics, MSU, MSU Publishing Co., (M. Dubinin, V. Savrin eds.), pp. 443-449 (2004).  DOI: https://doi.org/10.48550/arXiv.2505.09531      [PDF]
  
• 12. S. Elli, F. Ganazzoli, E.G. Timoshenko, Yu.A. Kuznetsov, R. Connolly. "Size and persistence length of molecular bottle-brushes by Monte Carlo simulations." J. Chem. Phys. Vol. 120, No 13, pp. 6257-6267 (2004).      [PDF]
  
• 13. R. Connolly, E.G. Timoshenko, Yu.A. Kuznetsov. "Monte Carlo simulations of infinitely dilute solutions of amphiphilic diblock star copolymers." J. Chem. Phys. Vol. 119, No 16, pp. 8736-8746 (2003).     [PDF]
  
• 14. E.G. Timoshenko, Yu.A. Kuznetsov, R.N. Basovsky. "Comparison of the energy histograms and conformations between different models of copolymers on lattice." J. Non-Cryst. Solids, Vol. 315, No 3, pp. 304-311 (2003).     [PDF]
  
• 15. E.G. Timoshenko, Yu.A. Kuznetsov, R. Connolly. "Conformations of dendrimers in dilute solution." J. Chem. Phys. Vol. 117, No 19, pp. 9050-9062 (2002).     [PDF]
  
• 16. E.G. Timoshenko, Yu.A. Kuznetsov. "Improved Gaussian self-consistent method - Applications to homopolymers with different architectures in dilute solution." J. Chem. Phys. Vol. 117, No 11, pp. 5404-5414 (2002).     [PDF]
  
• 17. E.G. Timoshenko, Yu.A. Kuznetsov, R. Connolly. "Intra-chain correlation functions and shapes of homopolymers with different architectures in dilute solution." J. Chem. Phys., Vol. 116, No 9, pp. 3905-3916 (2002).      [PDF]
  
• 18. E.G. Timoshenko, Yu.A. Kuznetsov. "Equilibrium and kinetics at the coil-to-globule transition of star and comb heteropolymers in infinitely dilute solutions." Colloids and Surfaces A, Vol. 190, No 1-2, pp. 135-144 (2001).      [PDF]
  
• 19. E.G. Timoshenko, R.N. Basovsky, Yu.A. Kuznetsov. "Micellisation vs aggregation in dilute solutions of amphiphilic heteropolymers." Colloids and Surfaces A, Vol. 190, No 1-2, pp. 129-134 (2001).     [PDF]
  
• 20. F. Ganazzoli, Yu.A. Kuznetsov, E.G. Timoshenko. "Conformations of amphiphilic diblock star copolymers." Macromol. Theory Simul. Vol. 10, No 4, pp. 325-338 (2001).     [PDF]
  
• 21. E.G. Timoshenko, Yu.A. Kuznetsov. "Aggregation number distributions and mesoglobules in dilute solutions of diblock and triblock copolymers." EuroPhys. Lett. Vol. 53, No 3, pp. 322-327 (2001).     [PDF]
  
• 22. Yu.A. Kuznetsov, E.G. Timoshenko. "Influence of reptations on conformations of the homopolymer in Monte Carlo simulation." Progr. Colloid Polym. Sci. Vol. 115, No 30, pp. 146-150 (2000). In: Trends in Colloid and Interface Science XIV, 2000, Volume 115, ISBN: 978-3-540-67128-2. DOI: https://doi.org/10.1007/3-540-46545-6_30     [PDF]
  
• 23. E.G. Timoshenko, Yu.A. Kuznetsov. "Study of mesoglobules in solutions of amphiphilic heteropolymers." Progr. Colloid Polym. Sci. Vol. 115, No 4, pp. 117-120 (2000). In: Trends in Colloid and Interface Science XIV, 2000, Volume 115, ISBN: 978-3-540-67128-2. DOI: https://doi.org/10.1007/3-540-46545-6_24      [PDF]
  
• 24. D.E. Jennings, Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "A lattice model Monte-Carlo study of coil-to-globule and other conformational transitions of polymer, amphiphile and solvent." J. Chem. Phys. Vol. 112, No 17, pp. 7711-7722 (2000).       [PDF]
  
• 25. E.G. Timoshenko, Yu.A. Kuznetsov. "Analysis of stability of macromolecular clusters in dilute heteropolymer solutions." J. Chem. Phys. Vol. 112, No 18, pp. 8163-8175 (2000).     [PDF]
  
• 26. E.G. Timoshenko, Yu.A. Kuznetsov. "On the toroidal and crystalline globules in dilute homopolymer solutions." Europhys. Conf. Abs. Vol. 23H, pp. 130-131 (1999).       [PDF]
  
• 27. Yu.A. Kuznetsov, E.G. Timoshenko. "On the conformational structure of a stiff homopolymer." J. Chem. Phys. Vol. 111, No 8, pp. 3744-3752 (1999).      [PDF]
  
• 28. N.A. Sveshnikov, E.G. Timoshenko. "Dependence of the partition function on the boundary condition and confinement in the gauge field theory." pp. 150-164, In: "Modern problems of Quantum Theory." Eds: V.I. Savrin, O.A. Khrustalev. (In Russian and English). Nuclear Physics Institute, Moscow M.V. Lomonosov State University Publ., No 98-23/524, Moscow, Russia (1998).     [PDF]
  
• 29. R.G. Reilly, M.T. Kechadi, K.A. Dawson, Yu.A. Kuznetsov, E.G. Timoshenko. "Using recurrent neural networks to predict aspects of 3D structure of folded copolymer sequences." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2565-2573 (1998).  DOI: https://doi.org/10.48550/arXiv.2407.11493     [PDF]
  
• 30. M.T. Kechadi, R.G. Reilly, K.A. Dawson, Yu.A. Kuznetsov, E.G. Timoshenko. "A study of sequence distribution of a painted globule as a model for proteins with good folding properties." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2383-2391 (1998). DOI: https://doi.org/10.48550/arXiv.cond-mat/0104440       [PDF]
  
• 31. D.E. Jennings, Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Further investigations into conformational transitions in a lattice model of three-component mixtures of solvent, amphiphile and soluble polymers." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2365-2382 (1998).     [PDF]
  
• 32. A. Byrne, E.G. Timoshenko, K.A. Dawson. "Simulations of homopolymer collapse kinetics in dilute solution." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2289-2302 (1998).      [PDF]
  
• 33. Yu.A. Kuznetsov, E.G. Timoshenko. "Self-consistent treatment of copolymers with arbitrary sequences." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2265-2288 (1998).      [PDF]
  
• 34. E.G. Timoshenko, Yu.A. Kuznetsov. "A non-equilibrium approach for polymer solutions." Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2359-2364 (1998).       [PDF]
  
• 35. N.A. Sveshnikov, E.G. Timoshenko. "Boundary conditions and confinement in the gauge field theory at finite temperature." Theoretical and Mathematical Physics (Russia). Vol. 117, No. 2, pp. 1274-1285 (English issue) [pp. 206-220 (Russian issue)] (1998).     [PDF]
  
• 36. N.A. Sveshnikov, E.G. Timoshenko. "Partition function versus boundary conditions and confinement in the Yang-Mills theory." Phys. Rev. D. Vol. 58, No 8, pp. 085024 -085024-9 (1998).     [PDF]
  
• 37. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Conformational structure of amphiphilic copolymers in dilute solutions." Physica A. Vol. 257, No 1-4, pp. 61-76 (1998).     [PDF]
  
• 38. D.A. Tikhonov, R.V. Polozov, E.G. Timoshenko, Yu.A. Kuznetsov, A.V. Gorelov, K.A. Dawson. "Hydration of a B-DNA fragment in the method of atom-atom correlation functions in the RISM approximation." J. Chem. Phys. Vol. 109, No 4, pp. 1528-1539 (1998).     [PDF]
  
• 39. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Conformational transitions of heteropolymers in dilute solutions." Phys. Rev. E. Vol 57, No 6, pp. 6801-6811 (1998).      [PDF]
  
• 40. D. Jennings, Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Conformational transitions in a lattice model of a three-component mixture of solvent, amphiphile, and soluble polymers." J. Chem. Phys. Vol. 108, No 4, pp. 1702-1709 (1998).     [PDF]
  
• 41. N.A. Sveshnikov, E.G. Timoshenko. "Boundary effects and confinement in the gauge field theory." The Proceedings of "XII International HEPQFT Workshop." Samara, Russia, 4 - 10 September 1997. (B.B. Levchenko, ed.), (Moscow), pp. 341-344, NPI MSU, MSU Publishing Co. (1998).     [PDF]
  
• 42. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Simple Models of Biological Macromolecules." The Proceedings of "XII International HEPQFT Workshop." Samara, Russia, 4 - 10 September 1997. (B.B. Levchenko, ed.), (Moscow), pp. 489-495, NPI MSU, MSU Publishing Co. (1998).     [PDF]
  
• 43. K.A. Dawson, A.V. Gorelov, E.G. Timoshenko, Yu.A. Kuznetsov, A. Du Chesne. "Formation of mesoglobules from phase separation in dilute polymer solutions; A study in experiment, theory, and applications." Physica, Vol. A 244, pp. 68-80 (1997).      [PDF]
  
• 44. D.A. Tikhonov, R.V. Polozov, A.V. Gorelov, E.G. Timoshenko, Yu.A. Kuznetsov, L.A. Panchenko, K.A. Dawson. "Hydration of the B-DNA fragment, d(GGGGG). Integral equation theory of liquids." (In Russian). Biophysics (Russia), Vol. 42, No 5, pp. 1066-1078 (1997).     [PDF]
  
• 45. D.A. Tikhonov, R.V. Polozov, A.V. Gorelov, E.G. Timoshenko, Yu.A. Kuznetsov, L.A. Panchenko, K.A. Dawson. "Integral equations theory of liquids for studying of hydration of macromolecules." (In Russian). Biophysics (Russia), Vol. 42, No 5, pp. 1054-1065 (1997).     [PDF]
  
• 46. A. Byrne, E.G. Timoshenko, K.A. Dawson. "Monte Carlo simulation for the kinetics of collapse and phase separation in homopolymer solutions." Physica, Vol. A 243, No 1-2, pp. 14-24 (1997).     [PDF]
  
• 47. E.G. Timoshenko, Yu.A. Kuznetsov, A. Moskalenko, K.A. Dawson. "Self-consistent approaches for the protein folding problem: kinetics and equilibrium properties of random copolymers." Progr. Theor. Phys. Suppl. (Japan), Vol. 126, pp. 321-327, (1997).     [PDF]
  
• 48. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "A nonequilibrium approach for random amphiphilic copolymer model." J. Stat. Phys., Vol. 89, No 1-2, pp. 347-367 (1997).     [PDF]
  
• 49. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Gaussian self-consistent approach to multichain polymer systems." Physica, Vol. A 240, No 3-4, pp. 432-442 (1997).     [PDF]
  
• 50. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Phase diagram of a Gaussian random copolymer." Phys. Rev., Vol. E 55, No 5, pp. 5750-5758, (1997).     [PDF]
  
• 51. K.A. Dawson, E.G. Timoshenko, Yu.A. Kuznetsov. "Kinetics of conformational transitions of a single polymer chain." Physica, Vol. A 236, No 1-2, pp. 58-74 (1997).     [PDF]
  
• 52. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Equilibrium and kinetic phenomena in a stiff homopolymer and possible applications to DNA." J. Chem. Phys. 105, No 16, pp. 7116-7134 (1996).     [PDF]
  
• 53. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Kinetics of a Gaussian random copolymer as a prototype for protein folding." Phys. Rev. E 54, No 4, pp. 4071-4086 (1996).     [PDF]
  
• 54. K.A. Dawson, E.G. Timoshenko, Yu.A. Kuznetsov. "The kinetic laws for polymer collapse and biopolymer folding." Macromolecular Symposia, Vol. 106, pp. 91-102 (1996).     [PDF]
  
• 55. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Kinetic laws at the collapse transition of a homopolymer." J. Chem. Phys., Vol. 104, No 9, pp. 3338-3347 (1996).     [PDF]
  
• 56. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Gaussian self-consistent method for the kinetics of heteropolymers: A direction in studying the protein folding problem." Phys. Rev., Vol. E 53, No 4, pp. 3886-3899 (1996).     [PDF]
  
• 57. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "New orientationally ordered phases of a homopolymer." J. Chem. Phys., Vol. 104, No 1, pp. 336-341 (1996).     [PDF]
  
• 58. Yu.A. Kuznetsov, E.G. Timoshenko, K.A. Dawson. "Kinetics at the collapse transition of homopolymers and random copolymers." J. Chem. Phys., Vol. 103, No 11, pp. 4807-4818 (1995).     [PDF]
  
• 59. E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Kinetics at the collapse transition. Gaussian self-consistent approach." J. Chem. Phys., Vol. 102, No 4, pp. 1816-1823 (1995).     [PDF]
  
• 60. E.G. Timoshenko, K.A. Dawson. "Equilibrium properties of polymers from the Langevin equation: Gaussian self-consistent approach." Phys. Rev., Vol. E 51, No 1, pp. 492-498 (1995).     [PDF]
  
• 61. E.G. Timoshenko. "Wilson loop for SU(N)-gluodynamics." Problems on High Energy Physics and Quantum Field Theory - Proceedings of the XV Workshop, IHEP, Protvino, pp. 169-174 (1995).     [PDF]
  
• 62. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition in gluodynamics via variables at infinity." Problems on High Energy Physics and Quantum Field Theory - Proceedings of the XV Workshop, IHEP, Protvino, pp. 162-168 (1995).     [PDF]
  
• 63. K.A. Dawson, E.G. Timoshenko, P. Kiernan. "Theoretical and experimental approaches to kinetics at the collapse transition of a homopolymer." Il Nuovo Cimento, Vol. D 16, No 7, pp. 675-688 (1994).      [PDF]
  
• 64. A.V. Gorelov, L.N. Vasil'eva, A. du Chesne, E.G. Timoshenko, Yu.A. Kuznetsov, K.A. Dawson. "Analysis of dynamic light scattering of poly(N-isopropylacrylamide) across the collapse transition." Il Nuovo Cimento, Vol. D 16, No 7, pp. 711-720 (1994).     [PDF]
  
• 65. E.G. Timoshenko. "Dynamics of gauge fields in finite domain." Proceedings of the VIII International Workshop On High Energy Physics and Quantum Field Theory, Zvenigorod, Moscow Region, Russia, 15-21 September 1993. (B.B. Levchenko, ed.), (Moscow), pp. 213-217, NPI MSU, MSU Publishing Co. (1994).     [PDF]
  
• 66. E.G. Timoshenko. "Algebraic confinement and Wilson loop in SU(N) gluodynamics." Phys. Atom. Nucl. [Journal of Nuclear Physics (Russia), pp. 277-284], Vol. 56, No 11, pp. 1613-1616 (1993).     [PDF]
  
• 67. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition in gluodynamics." Physics Letters, Vol. B 289, No 3-4, pp. 423-428 (1992).     [PDF]
  
• 68. E.G. Timoshenko. "Wilson loop for SU(N) gluodynamics." Report NPI MSU 92-17/266, pp. 1-10, Moscow, Russia (1992).     [PDF]
  
• 69. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition in gluodynamics." Report IHEP 92-31, pp. 1-30, Serpukhov, Russia (1992).     [PDF]
  
• 70. N.A. Sveshnikov, E.G. Timoshenko. "Confinement phase transition mechanism of SU(2)-gluodynamics." Report IHEP 91-140, pp. 1-13, Serpukhov, Russia (1991).      [PDF]
  
• 71. E.G. Timoshenko. "Reflections about God or the World through a physicist's eyes." Social Sciences and Contemporaneousness. Academy of Sciences USSR. (Moscow). ISSN:  01323458.  Vol. 2, pp. 119-130 (1991).  [English translation]. DOI: https://doi.org/10.6084/m9.figshare.25684704     [PDF]
  
• 72. G.A. Sardanashvily, E.G. Timoshenko. "Gauge model of the fifth force." (In Russian). The Bulletin of Moscow State University, Series 3, Physics and astronomy, Vol. 31, No 4, pp. 70-72 (1990). [English translation]. DOI: https://doi.org/10.48550/arXiv.2407.09195     [PDF]
  
• 73. G.A. Sardanashvily, E.G. Timoshenko. "Caustics type of gravitational singularities." (In Russian). The Bulletin of Moscow State University, Series 3, Physics and astronomy, Vol. 30, No 3, pp. 75-77 (1989)  [English translation]. DOI: https://doi.org/10.48550/arXiv.2407.12954      [PDF]
  

Electronic publications on arXiv.org

• 1. arXiv:2505.09531 [cond-mat.stat-mech]
  Super Gaussian Self-Consistent method for systems with a two-body Hamiltonian.
  E. G. Timoshenko.
  Comments: 8 pages LaTeX only
  Subjects: Statistical Mechanics (cond-mat.stat-mech)
  Journal reference: The Proceedings of "The XVIIth International QFTHEP Workshop," 4-11 September 2003, Samara-Saratov, Russia, Skobeltsyn Institute of Nuclear Physics, MSU, MSU Publishing Co., (M. Dubinin, V. Savrin eds.), pp. 443-449 (2004).
  Related DOI: https://doi.org/10.48550/arXiv.2505.09531
• 2. arXiv:2407.11493 [cond-mat.soft]
  Using recurrent neural networks to predict aspects of 3-D structure of folded copolymer sequences.
  R. G. Reilly, M.-T. Kechadi, Yu. A. Kuznetsov, E. G. Timoshenko, K. A. Dawson.
  Comments: 10 pages, 4 postscript figures
  Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech); Computational Physics (physics.comp-ph)
  Related DOI: https://doi.org/10.48550/arXiv.2407.11493
• 3. arXiv:2407.12954 [gr-qc]
  Caustics type of gravitational singularities.@@
  G. A. Sardanashvily, E. G. Timoshenko.
  Comments: 4 pages. Translated from Russian by author on 07.07.2024
  Subjects: General Relativity and Quantum Cosmology (gr-qc)
  Related DOI: https://doi.org/10.48550/arXiv.2407.12954
• 
  4. arXiv:2407.09195 [gr-qc]
  Gauge model of the fifth force.
  G. A. Sardanashvily, E. G. Timoshenko.
  Comments: 5 pages. Translated from Russian by author on 09.07.2024
  Subjects: General Relativity and Quantum Cosmology (gr-qc); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.48550/arXiv.2407.09195
• 
  5. arXiv:2405.13189 [cond-mat.stat-mech]
  Boundary effects and confinement in the theory of nonabelian gauge fields.
  E. G. Timoshenko.
  Comments: PhD thesis, Translated from Russian. Moscow M.V. Lomonosov State University. Defended on: 27.04.1995. 77 pages, 5 figures. Supervisor: N.A. Sveshnikov
  Subjects: Statistical Mechanics (cond-mat.stat-mech); High Energy Physics - Theory (hep-th)
  Related DOI: https://doi.org/10.48550/arXiv.2405.13189
• 
  6. arXiv:cond-mat/0501285
  Structure and stability of chiral beta-tapes: a computational coarse-grained approach.
  G. Bellesia, M. V. Fedorov, Yu. A. Kuznetsov, E. G. Timoshenko.
  Comments: 24 pages, 5 PS figures. Accepted to J. Chem. Phys
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Biomolecules (q-bio.BM)
  Related DOI: https://doi.org/10.1063/1.1866012
• 
  7. arXiv:cond-mat/0410017
  Wavelet treatment of the intra-chain correlation functions of homopolymers in dilute solutions.
  M. V. Fedorov, G. N. Chuev, Yu. A. Kuznetsov, E. G.Timoshenko.
  Comments: RevTeX, 19 pages, 7 PS figures. Accepted for publication in PRE
  Subjects: Statistical Mechanics (cond-mat.stat-mech); Soft Condensed Matter (cond-mat.soft)
  Related DOI: https://doi.org/10.1103/PhysRevE.70.051803
• 
  8. arXiv:cond-mat/0308374
  Monte Carlo simulations of infinitely dilute solutions of amphiphilic diblock star copolymers.
  R. Connolly, E. G. Timoshenko, Yu. A. Kuznetsov.
  Comments: 12 pages, 11 ps figures. Accepted for publication in J. Chem. Phys
  Subjects: Soft Condensed Matter (cond-mat.soft)
  Related DOI: https://doi.org/10.1063/1.1610445
• 
  9. arXiv:cond-mat/0208519
  Conformations of dendrimers in dilute solution.
  E. G. Timoshenko, Yu. A. Kuznetsov, R. Connolly.
  Comments: RevTeX, 14 pages, 19 PS figures, Accepted for publication in J. Chem. Phys
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1063/1.1514571
• 
  10. arXiv:cond-mat/0207204
  Improved Gaussian self-consistent method - Applications to homopolymers with different architectures in dilute solution.
  E. G. Timoshenko, Yu. A. Kuznetsov.
  Comments: RevTeX 13 pages, 9 PS figures. Accepted for publication in J. Chem. Phys
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1063/1.1500357
• 
  11. arXiv:cond-mat/0112229
  Intra-chain correlation functions and shapes of homopolymers with different architectures in dilute solution.
  E. G. Timoshenko, Yu.  A. Kuznetsov, R. Connolly.
  Comments: RevTeX 12 pages, 10 PS figures. Accepted by J. Chem. Phys
  Subjects: Soft Condensed Matter (cond-mat.soft)
  Related DOI: https://doi.org/10.1063/1.1448490
• 
  12. arXiv:cond-mat/0108440
  Comparison of the energy histograms and conformations between different models of copolymers on lattice.
  E. G. Timoshenko, Yu. A. Kuznetsov, R. N. Basovsky.
  Comments: 11 pages, 6 PS figures. Submitted to J. Non-Cryst. Solids
  Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Quantitative Biology (q-bio)
  Related DOI: https://doi.org/10.1016/S0022-3093(02)01612-5
• 
  13. arXiv:cond-mat/0104495
  Self-consistent Treatment of Copolymers with Arbitrary Sequences.
  Yu. A. Kuznetsov, E. G. Timoshenko.
  Comments: 16 pages, 25 PS figures
  Journal-ref: Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2265-2288 (1998)
  Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Quantitative Biology (q-bio)
  Related DOI: https://doi.org/10.48550/arXiv.cond-mat/0104495
• 
  14. arXiv:cond-mat/0104440
  A Study of Sequence Distribution of a Painted Globule as a Model for Proteins with Good Folding Properties.
  M-T. Kechadi, R. G. Reilly, K. A. Dawson, Yu. A. Kuznetsov, E. G. Timoshenko.
  Comments: 11 pages incl. 6 PS figures. Paper presented at the International Conference on Morphology and Kinetics of Phase Separating Complex Fluids, Messina, Italy, June 1997
  Journal-ref: Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2383-2391 (1998)
  Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Quantitative Biology (q-bio)
  Related DOI: https://doi.org/10.48550/arXiv.cond-mat/0104440
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  15. arXiv:cond-mat/0103103
  Micellisation vs aggregation in dilute solutions of amphiphilic heteropolymers.
  E. G. Timoshenko, R. Basovsky, Yu. A. Kuznetsov.
  Comments: RevTeX, 4 pages, 7 PS figures. Accepted for publication in Colloids and Surfaces A
  Subjects: Soft Condensed Matter (cond-mat.soft); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1016/S0927-7757(01)00672-0
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  16. arXiv:cond-mat/0103102
  Equilibrium and kinetics at the coil-to-globule transition of star and comb heteropolymers in infinitely dilute solutions.
  E. G. Timoshenko, Yu. A. Kuznetsov.
  Comments: RevTeX, 5 pages, 10 PS figures. Accepted for publication in Colloids and Surfaces A
  Subjects: Soft Condensed Matter (cond-mat.soft); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1016/S0927-7757(01)00673-2
• 
  17. arXiv:cond-mat/0011448
  Conformations of amphiphilic diblock star copolymers.
  F. Ganazzoli, Yu. A. Kuznetsov, E. G. Timoshenko.
  Comments: RevTeX, 13 pages, 20 PS figures. Accepted for publication in Macromol. Theory Simul
  Subjects: Soft Condensed Matter (cond-mat.soft); Mesoscale and Nanoscale Physics (cond-mat.mes-hall); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1002/1521-3919(20010401)10:4<325::AID-MATS325>3.0.CO;2-2
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  18. arXiv:cond-mat/0011386
  Aggregation number distributions and mesoglobules in dilute solutions of diblock and triblock copolymers.
  E. G. Timoshenko, Yu. A. Kuznetsov.
  Comments: 4 pages, 4 PS figures. Accepted for publication in EPL
  Subjects: Soft Condensed Matter (cond-mat.soft); Disordered Systems and Neural Networks (cond-mat.dis-nn); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1209/epl/i2001-00156-5
• 
  19. arXiv:cond-mat/0003087
  Influence of reptations on conformations of the homopolymer in Monte Carlo simulation.
  Yu. A. Kuznetsov, E. G. Timoshenko.
  Comments: 13 pages, RevTeX, 3 ps figures. Accepted for publication in Progr. Colloid Polym. Sci
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)
  In: Trends in Colloid and Interface Science XIV, 2000, Volume 115, ISBN : 978-3-540-67128-2.
  Related DOI: https://doi.org/10.1007/3-540-46545-6_30
• 
  20. arXiv:cond-mat/0002307
  Analysis of stability of macromolecular clusters in dilute heteropolymer solutions.
  E. G. Timoshenko, Yu. A. Kuznetsov.
  Comments: 30 pages, RevTeX, 14 ps figures. Accepted for publication in J. Chem. Phys
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1063/1.481417
• 
  21. arXiv:cond-mat/9906030
  On the conformational structure of a stiff homopolymer.
  Yu. A. Kuznetsov, E. G. Timoshenko.
  Comments: 9 pages, 16 PS figures. Journal of Chemical Physics, in press
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1063/1.479655
• 
  22. arXiv:cond-mat/9804176
  Hydration of a B-DNA Fragment in the Method of Atom-atom Correlation Functions with the Reference Interaction Site Model Approximation.
  D. A. Tikhonov, R. V. Polozov, E. G. Timoshenko, Yu. A. Kuznetsov, A. V. Gorelov, K. A Dawson.
  Comments: 9 pages, RevTeX, 9 pages of ps figures, accepted for publications in JCP
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech)
  Related DOI: https://doi.org/10.1063/1.476704
• 
  23. arXiv:cond-mat/9802230
  Conformational transitions of heteropolymers in dilute solutions.
  E. G. Timoshenko, Yu. A. Kuznetsov, K. A. Dawson.
  Comments: 15 pages, RevTeX, 20 ps figures, accepted for publication in Phys. Rev. E
  Subjects: Soft Condensed Matter (cond-mat.soft); Statistical Mechanics (cond-mat.stat-mech); Quantitative Biology (q-bio)
  Related DOI: https://doi.org/10.1103/PhysRevE.57.6801
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  24. arXiv:hep-th/9802161
  The partition function versus boundary conditions and confinement in the Yang-Mills theory.
  N. A. Sveshnikov, E. G. Timoshenko.
  Comments: 14 pages, RevTeX, submitted to Phys. Rev. D
  Journal-ref: Phys.Rev. D58 (1998) 085024
  Subjects: High Energy Physics - Theory (hep-th); Statistical Mechanics (cond-mat.stat-mech); High Energy Physics - Phenomenology (hep-ph)
  Related DOI: https://doi.org/10.1103/PhysRevD.58.085024

PhDs supervised to completion by Dr E.G. Timoshenko at UCD

• 
  1. Nikolaj Georgi, 2005. "Advanced numerical techniques for computer simulations in statistical mechanics of synthetic polymers and biopolymers."
• 
  2. Giovanni Bellesia, 2005. "In silico study of conformational properties of self-assembled structures formed by rationally designed oligopeptides."
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  3. Ronan Connolly, 2003. "Conformations of branched polymers." ("BOC gases" award).
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  4. Roman N. Basovsky, 2002. "Computer simulations of conformational transitions in macromolecular solutions."
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  5. Alan A. Byrne, 1999. "The nature of the phase transitions of polymers."
• 6. Yuri A. Kuznetsov, 1998. "Theoretical study of equilibrium structures and kinetic phenomena in macromolecular solutions." https://doi.org/10.6084/m9.figshare.17030144     [PDF]

  
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  7. Deirdre E. Jennings, 1998. "Conformational transitions of three-component mixtures of polymer, amphiphile and solvent: A Monte Carlo study."